Publications using PyScat

PyScat, originally shipped as part of pypesto, was used in the following publications:

1. Stephan Grein, David R. Penas, Daniel Weindl, Polina Lakrisenko, Julio R. Banga, and Jan Hasenauer. Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences. bioRxiv, 2026. URL: https://www.biorxiv.org/content/early/2026/07/13/2026.07.11.737731, arXiv:https://www.biorxiv.org/content/early/2026/07/13/2026.07.11.737731.full.pdf, doi:10.64898/2026.07.11.737731.

2. Paul Jonas Jost, Christoph Thiele, and Jan Hasenauer. Balancing label resolution and computational cost in dynamical models of lipid metabolism. 2026. URL: https://arxiv.org/abs/2606.13620, arXiv:2606.13620.

3. Vincent Wieland, Tobias Blum, Irina Iriady, Laia Reverte-Salisa, Dilan Pathirana, Irmgard Förster, Heike Weighardt, and Jan Hasenauer. Mathematical modeling of the canonical aryl hydrocarbon receptor pathway. bioRxiv, 2026. URL: https://www.biorxiv.org/content/early/2026/05/08/2026.05.05.722708, arXiv:https://www.biorxiv.org/content/early/2026/05/08/2026.05.05.722708.full.pdf, doi:10.64898/2026.05.05.722708.